Welcome to the Genetic Sequence Database Application
BioStringDB
BioStringDB is a database dedicated to the research and usage of genetic sequencing using auxiliary functions to provide information extracted from the related data.
BioStringDB is a database dedicated to the research and usage of genetic sequencing using auxiliary functions to provide information extracted from the related data.
| Name | Input | Output | Description |
|---|---|---|---|
| isDNA | nucleotide sequence [text] | boolean | verify if sequence is a DNA sequence |
| complement | nucleotide sequence [text] | nucleotide sequence | returns the complementary DNA strand |
| reverse | nucleotide sequence [text] | nucleotide sequence | returns the reverse DNA strand |
| getGCcontent | nucleotide sequence [text] | amount of GC content | returns the amount of GC content of DNA sequence |
| transcript | nucleotide sequence (DNA) [text] | nucleotide sequence (RNA) | returns the messenger RNA sequence |
| translation | position [integer], nucleotide sequence (RNA) [text] | aminoacid sequence (protein) | transforms na RNA sequence into an aminoacid sequence (protein) |
| searchORF | position [integer], nucleotide sequence (RNA)[text], length (minimum size of ORF) [integer] | sequence Collection - aminoacid sequence (protein) | search ORFs in a nucleotide sequence (RNA) |
| getTaxonomyIdChildren | taxonomy_id [integer] | numeric Collection - taxonomy_id | get TaxonomyId children of a specific taxonomyId |
| getTaxonomyIdChildrenSet | taxonomy_id [integer] | numeric Collection - taxonomy_id | get TaxonomyId children of a specific taxonomyId set |
| getCountGenomeTaxonomy | taxonomy_id [integer] | bigint - amount of gbkid | get the amount of gbkid belonging to a specific taxonomyId |
| getCountProteinTaxonomy | taxonomy_id [integer] | bigint - amount of proteinid | get the amount of proteinid belonging to a specific taxonomyId |
| getCountHitsProtein | taxonomy_id [numeric], evalue [double precision] | amount of hits [integer] | gets the amount of hits in a protein given an e-value |
| getProteinTaxonomy | taxonomy_id [integer] | proteinid - numeric collection | get the proteinid collection belonging to a specific taxonomyId |
| getSimilarProtein | taxonomy_id [integer], taxonomy_id [integer] | proteinid - numeric collection | get the similar proteinid collection belonging to a specific taxonomyId compared with other organism. |
| getSingleGene | taxonomy_id [integer], taxonomy_id [integer] | proteinid - numeric collection | gets single genes in a taxonomic group |
| getOrthologousGene | taxonomy_id [integer], taxonomy_id [integer] | proteinid - numeric collection | get the orthologous genes to a specific taxonomyId |
| getParalogousGene | taxonomy_id [integer] | proteinid - numeric collection | get the paralogous genes to a specific taxonomyId |